I think I'm the one that came up with that version of the batch file.
In my organization in my MAME\ROMs directory, I do keep the game directories in place and have the 1 or 2 CHD files in each subdirectory.
I could not get the *\*.CHD to work right in the .BAT file, so when I copied the files from my \MAME\ROMS directory to the \CHD_V4 directory, I copied them all into the same place to make the .BAT file work.
When I get to the point of installing the generated v5 CHD files, I'll place them all in the MAME\ROMS directory and let CLRMamePro create the other directories and move the .CHD files into place.
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